Legionella fraseri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella fraseri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
NCBI Strain Identifiers 2014;PtVF89/2014;PtVF89
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000586315.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 61
N50 Contigs 155,636 bp
Longest Contig 275,627 bp
Scaffold Count 57
N50 Scaffolds 192,218 bp
Longest Scaffold 316,306 bp
Genome Size 3,471,065 bp
Protein Count 3,130
Coding Density 88.55%
GC Percentage 38.19%
Ambiguous Bases N/A
GTDB representative GCA_000586315.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154991v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401156
Country Portugal: Vila Franca de Xira
Date 2016-2-5
Genbank Assembly Accession GCA_001549915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source 2014 outbreak in the area of Vila Franca de Xira
Latitude Longitude None
Molecule Count N/A
CDS Count 3,136
Refseq Category na
Seq Rel Date 2016/02/05
Spanned Gaps 4
Species Taxid 446
SSU Count 1
Submitter National Institute of Health, Portugal
Taxid 446
Total Gap Length 74
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCUQ00000000.1