Xylella fastidiosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa
NCBI Strain Identifiers COF0407
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000767565.1)
Genome Characteristics
CheckM Completeness 99.28%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 172
N50 Contigs 56,951 bp
Longest Contig 176,368 bp
Scaffold Count 172
N50 Scaffolds 56,951 bp
Longest Scaffold 176,368 bp
Genome Size 2,538,474 bp
Protein Count 2,508
Coding Density 81.93%
GC Percentage 51.87%
Ambiguous Bases 1
GTDB representative GCA_000767565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name XFAS006-SEQ-1-ASM-1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03862125
Country Costa Rica: San Jose Province; Curridabat
Date 2016-2-5
Genbank Assembly Accession GCA_001549825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude None
Molecule Count 4
CDS Count 2,446
Refseq Category na
Seq Rel Date 2016/02/05
Spanned Gaps 0
Species Taxid 2371
SSU Count 1
Submitter cBio Corp
Taxid 2371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRVJ00000000.1