Bordetella pseudohinzii
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pseudohinzii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pseudohinzii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pseudohinzii
NCBI Strain Identifiers 11;228;228/11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000657795.2)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 92
N50 Contigs 86,114 bp
Longest Contig 275,223 bp
Scaffold Count 92
N50 Scaffolds 86,114 bp
Longest Scaffold 275,223 bp
Genome Size 4,529,749 bp
Protein Count 4,232
Coding Density 91.67%
GC Percentage 66.56%
Ambiguous Bases N/A
GTDB representative GCA_000657795.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154848v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04448480
Country Germany: Dusseldorf
Date 2016-2-3
Genbank Assembly Accession GCA_001548485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source C57Bl/6 mouse at the Animal Research Facility
Latitude Longitude 51.11 N 6.470000000000027 E
Molecule Count N/A
CDS Count 4,227
Refseq Category na
Seq Rel Date 2016/02/03
Spanned Gaps 0
Species Taxid 1331258
SSU Count 1
Submitter Pennsylvania State University
Taxid 1331258
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRSP00000000.1