Prevotella intermedia
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Prevotella; s__Prevotella intermedia
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella intermedia
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella intermedia
NCBI Strain Identifiers 17-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001953955.1)
Genome Characteristics
CheckM Completeness 99.32%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 100.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 19
Contig Count 2
N50 Contigs 2,131,046 bp
Longest Contig 2,131,046 bp
Scaffold Count 2
N50 Scaffolds 2,131,046 bp
Longest Scaffold 2,131,046 bp
Genome Size 2,737,273 bp
Protein Count 2,360
Coding Density 85.07%
GC Percentage 43.46%
Ambiguous Bases N/A
GTDB representative GCA_001953955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM154819v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00034934
Country Japan:Osaka
Date 2015-7-10
Genbank Assembly Accession GCA_001548195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saliva
Latitude Longitude 34.69 N 135.51 E
Molecule Count 2
CDS Count 2,388
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 28131
SSU Count 4
Submitter osaka dental university
Taxid 28131
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None