Campylobacter_D jejuni
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers JL-CJHLIU1-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 69
N50 Contigs 128,412 bp
Longest Contig 297,322 bp
Scaffold Count 38
N50 Scaffolds 183,898 bp
Longest Scaffold 385,926 bp
Genome Size 1,808,334 bp
Protein Count 1,945
Coding Density 93.26%
GC Percentage 30.22%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154767v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04008499
Country China: Jinlin
Date 2016-2-2
Genbank Assembly Accession GCA_001547675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chicken feces
Latitude Longitude 43.88 N 125.35 E
Molecule Count N/A
CDS Count 1,904
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 31
Species Taxid 197
SSU Count 1
Submitter China CDC
Taxid 197
Total Gap Length 3459
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LISQ00000000.1