Enterococcus_B faecium
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B faecium
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecium
NCBI Strain Identifiers VRE-1407687
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001544255.1)
Genome Characteristics
CheckM Completeness 99.63%
CheckM Contamination 2.72%
CheckM Strain Heterogeneity 100.0
5S Count 6
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 216
N50 Contigs 31,096 bp
Longest Contig 98,354 bp
Scaffold Count 216
N50 Scaffolds 31,096 bp
Longest Scaffold 98,354 bp
Genome Size 2,962,291 bp
Protein Count 2,998
Coding Density 84.86%
GC Percentage 38.09%
Ambiguous Bases 239
GTDB representative GCA_001544255.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154728v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04270964
Country Sweden: Uppsala
Date 2016-2-2
Genbank Assembly Accession GCA_001547285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude 59.52 N 17.38 E
Molecule Count N/A
CDS Count 3,115
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 0
Species Taxid 1352
SSU Count 7
Submitter Uppsala University
Taxid 1352
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNMS00000000.1