Veillonella atypica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_C; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__Veillonella atypica
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__Veillonella atypica
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Negativicutes; o__Veillonellales; f__Veillonellaceae; g__Veillonella; s__Veillonella atypica
NCBI Strain Identifiers CMW7756B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002959915.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 132
N50 Contigs 59,595 bp
Longest Contig 125,799 bp
Scaffold Count 94
N50 Scaffolds 84,707 bp
Longest Scaffold 189,941 bp
Genome Size 2,098,853 bp
Protein Count 1,928
Coding Density 87.14%
GC Percentage 38.88%
Ambiguous Bases N/A
GTDB representative GCA_002959915.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154684v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03956213
Country None
Date 2016-2-2
Genbank Assembly Accession GCA_001546845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 1,922
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 38
Species Taxid 39777
SSU Count 2
Submitter The Genome Institute at Washington University
Taxid 39777
Total Gap Length 3800
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRQT00000000.1