Bifidobacterium vaginale_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium vaginale_B
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis
NCBI Strain Identifiers GED7760B
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 60
N50 Contigs 64,758 bp
Longest Contig 207,425 bp
Scaffold Count 25
N50 Scaffolds 145,945 bp
Longest Scaffold 283,109 bp
Genome Size 1,489,151 bp
Protein Count 1,143
Coding Density 87.27%
GC Percentage 43.28%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154645v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03851015
Country None
Date 2016-2-2
Genbank Assembly Accession GCA_001546455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 1,193
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 35
Species Taxid 2702
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 2702
Total Gap Length 3500
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRQA00000000.1