Clostridium_P perfringens
Isolate HQ 16S/23S 7 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_P; s__Clostridium_P perfringens
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium perfringens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium perfringens
NCBI Strain Identifiers MJR7757A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000013285.1)
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 7
Contig Count 274
N50 Contigs 39,818 bp
Longest Contig 138,019 bp
Scaffold Count 228
N50 Scaffolds 51,972 bp
Longest Scaffold 203,590 bp
Genome Size 3,590,266 bp
Protein Count 3,357
Coding Density 83.72%
GC Percentage 27.79%
Ambiguous Bases N/A
GTDB representative GCA_000013285.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154635v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03842618
Country None
Date 2016-2-2
Genbank Assembly Accession GCA_001546355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 3,298
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 46
Species Taxid 1502
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 1502
Total Gap Length 4600
Translation Table 11
tRNA Count (total) 12
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRPU00000000.1