Bifidobacterium bifidum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
NCBI Strain Identifiers MJR8628B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001025135.1)
Genome Characteristics
CheckM Completeness 99.54%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 64
N50 Contigs 73,084 bp
Longest Contig 192,583 bp
Scaffold Count 34
N50 Scaffolds 207,215 bp
Longest Scaffold 368,148 bp
Genome Size 2,262,348 bp
Protein Count 1,917
Coding Density 85.80%
GC Percentage 62.83%
Ambiguous Bases N/A
GTDB representative GCA_001025135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154622v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03842220
Country None
Date 2016-2-2
Genbank Assembly Accession GCA_001546225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 1,922
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 30
Species Taxid 1681
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 1681
Total Gap Length 3000
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRPO00000000.1