Lactobacillus crispatus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
NCBI Strain Identifiers VMC2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002088015.1)
Genome Characteristics
CheckM Completeness 98.9%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 273
N50 Contigs 18,041 bp
Longest Contig 113,334 bp
Scaffold Count 258
N50 Scaffolds 18,663 bp
Longest Scaffold 113,334 bp
Genome Size 2,201,962 bp
Protein Count 2,407
Coding Density 88.64%
GC Percentage 36.88%
Ambiguous Bases 390
GTDB representative GCA_002088015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154602v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03893600
Country USA: Virginia
Date 2016-2-2
Genbank Assembly Accession GCA_001546025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vaginal
Latitude Longitude None
Molecule Count N/A
CDS Count 2,283
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 15
Species Taxid 47770
SSU Count 1
Submitter Vaginal Microbiome Consortium
Taxid 47770
Total Gap Length 533
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJDA00000000.1