Enterococcus_B faecium
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus_B; s__Enterococcus_B faecium
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__Enterococcus faecium
NCBI Strain Identifiers VRE-1402006
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001544255.1)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 1.69%
CheckM Strain Heterogeneity 100.0
5S Count 6
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 182
N50 Contigs 37,649 bp
Longest Contig 97,148 bp
Scaffold Count 182
N50 Scaffolds 37,649 bp
Longest Scaffold 97,148 bp
Genome Size 3,146,512 bp
Protein Count 3,165
Coding Density 84.97%
GC Percentage 37.97%
Ambiguous Bases 400
GTDB representative GCA_001544255.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154568v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04270944
Country Sweden: Uppsala
Date 2016-2-2
Genbank Assembly Accession GCA_001545685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude 59.52 N 17.38 E
Molecule Count N/A
CDS Count 3,281
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 0
Species Taxid 1352
SSU Count 5
Submitter Uppsala University
Taxid 1352
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNLY00000000.1