Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCD12C100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 50
N50 Contigs 141,583 bp
Longest Contig 255,381 bp
Scaffold Count 35
N50 Scaffolds 151,743 bp
Longest Scaffold 298,983 bp
Genome Size 1,759,712 bp
Protein Count 1,857
Coding Density 93.15%
GC Percentage 31.28%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154544v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04004270
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,831
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 15
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 3753
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LISF00000000.1