Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCD11C671
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 62
N50 Contigs 110,725 bp
Longest Contig 173,827 bp
Scaffold Count 36
N50 Scaffolds 173,827 bp
Longest Scaffold 259,282 bp
Genome Size 1,703,181 bp
Protein Count 1,778
Coding Density 93.03%
GC Percentage 31.37%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154542v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04004261
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,746
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 26
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 3295
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LISD00000000.1