Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCF11C627
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 88
N50 Contigs 130,080 bp
Longest Contig 278,925 bp
Scaffold Count 52
N50 Scaffolds 141,112 bp
Longest Scaffold 448,292 bp
Genome Size 1,812,634 bp
Protein Count 1,923
Coding Density 92.51%
GC Percentage 31.12%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154541v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04004259
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chicken gizzard
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,898
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 36
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 3112
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LISC00000000.1