Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCH11C334
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 96
N50 Contigs 130,131 bp
Longest Contig 275,867 bp
Scaffold Count 50
N50 Scaffolds 150,500 bp
Longest Scaffold 346,694 bp
Genome Size 1,831,700 bp
Protein Count 1,936
Coding Density 92.19%
GC Percentage 31.10%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154536v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04004256
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chicken feces
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,920
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 46
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 7275
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIRZ00000000.1