Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCH11C605
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 99
N50 Contigs 82,108 bp
Longest Contig 385,638 bp
Scaffold Count 62
N50 Scaffolds 134,108 bp
Longest Scaffold 491,344 bp
Genome Size 1,840,055 bp
Protein Count 1,943
Coding Density 91.71%
GC Percentage 31.13%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154533v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04004258
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source chicken feces
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,927
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 37
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 6588
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LISB00000000.1