Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers SH-CCD12C136
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 61
N50 Contigs 118,072 bp
Longest Contig 213,463 bp
Scaffold Count 32
N50 Scaffolds 164,386 bp
Longest Scaffold 259,187 bp
Genome Size 1,747,758 bp
Protein Count 1,840
Coding Density 92.99%
GC Percentage 31.32%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154529v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03295192
Country China: Shanghai
Date 2016-2-2
Genbank Assembly Accession GCA_001545295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Diarrheal patient stool
Latitude Longitude 31.2 N 121.5 E
Molecule Count N/A
CDS Count 1,821
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 29
Species Taxid 195
SSU Count 1
Submitter China CDC
Taxid 195
Total Gap Length 2209
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXTU00000000.1