Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AU1215
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 0
23S Count 0
tRNA Count 19
Contig Count 80
N50 Contigs 160,063 bp
Longest Contig 429,493 bp
Scaffold Count 80
N50 Scaffolds 160,063 bp
Longest Scaffold 429,493 bp
Genome Size 6,487,674 bp
Protein Count 6,084
Coding Density 89.35%
GC Percentage 66.34%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154520v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04436518
Country USA
Date 2016-2-2
Genbank Assembly Accession GCA_001545205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 6,178
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 0
Species Taxid 287
SSU Count 0
Submitter University of Michigan
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRSF00000000.1