Pseudomonas_E lactis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E lactis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers Ps_40
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001439845.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 1.08%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 496
N50 Contigs 35,736 bp
Longest Contig 131,092 bp
Scaffold Count 103
N50 Scaffolds 583,596 bp
Longest Scaffold 1,294,703 bp
Genome Size 7,139,812 bp
Protein Count 6,488
Coding Density 86.45%
GC Percentage 59.56%
Ambiguous Bases 45
GTDB representative GCA_001439845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154272v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03085516
Country Italy: Padova
Date 2016-1-29
Genbank Assembly Accession GCA_001542725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source ricotta cheese
Latitude Longitude None
Molecule Count N/A
CDS Count 6,627
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 393
Species Taxid 294
SSU Count 1
Submitter University of Padova
Taxid 294
Total Gap Length 38900
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCYC00000000.1