Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers Ps_22
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 92.39%
CheckM Contamination 1.88%
CheckM Strain Heterogeneity 7.14
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 1,931
N50 Contigs 6,275 bp
Longest Contig 34,865 bp
Scaffold Count 357
N50 Scaffolds 157,174 bp
Longest Scaffold 1,211,739 bp
Genome Size 6,429,813 bp
Protein Count 6,527
Coding Density 80.23%
GC Percentage 59.77%
Ambiguous Bases 32
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154271v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03085509
Country Italy: Udine
Date 2016-1-29
Genbank Assembly Accession GCA_001542715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mozzarella cheese
Latitude Longitude None
Molecule Count N/A
CDS Count 6,661
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 1574
Species Taxid 294
SSU Count 1
Submitter University of Padova
Taxid 294
Total Gap Length 157091
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCYA00000000.1