Pseudomonas_E sp002966775
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp002966775
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers Ps_77
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002966775.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 1.67%
CheckM Strain Heterogeneity 9.09
5S Count 5
16S Count 2
23S Count 7
tRNA Count 20
Contig Count 256
N50 Contigs 90,784 bp
Longest Contig 369,294 bp
Scaffold Count 63
N50 Scaffolds 481,486 bp
Longest Scaffold 1,907,245 bp
Genome Size 6,197,608 bp
Protein Count 5,550
Coding Density 87.52%
GC Percentage 59.85%
Ambiguous Bases 14
GTDB representative GCA_002966775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154270v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03085510
Country United Kingdom: Bristol
Date 2016-1-29
Genbank Assembly Accession GCA_001542705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source beef
Latitude Longitude None
Molecule Count N/A
CDS Count 5,606
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 193
Species Taxid 294
SSU Count 2
Submitter University of Padova
Taxid 294
Total Gap Length 19160
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCYB00000000.1