Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers PPECC42
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 40.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 44
N50 Contigs 258,308 bp
Longest Contig 699,460 bp
Scaffold Count 1
N50 Scaffolds 5,019,692 bp
Longest Scaffold 5,019,692 bp
Genome Size 5,019,692 bp
Protein Count 4,648
Coding Density 87.97%
GC Percentage 50.72%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM154254v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04017854
Country China: Hunan
Date 2016-2-2
Genbank Assembly Accession GCA_001542545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lung
Latitude Longitude 28.19 N 112.98 E
Molecule Count 1
CDS Count 5,031
Refseq Category na
Seq Rel Date 2016/02/02
Spanned Gaps 43
Species Taxid 562
SSU Count 7
Submitter Total Genomics Solution co.
Taxid 562
Total Gap Length 2432
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRGE00000000.1