Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers Gxw_7004
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 11
16S Count 1
23S Count 6
tRNA Count 20
Contig Count 68
N50 Contigs 303,770 bp
Longest Contig 690,027 bp
Scaffold Count 65
N50 Scaffolds 323,009 bp
Longest Scaffold 885,831 bp
Genome Size 5,158,042 bp
Protein Count 4,673
Coding Density 86.75%
GC Percentage 45.29%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154161v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04349747
Country China: Guangxi
Date 2016-1-26
Genbank Assembly Accession GCA_001541615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 21.37 N 108.20 E
Molecule Count N/A
CDS Count 4,868
Refseq Category na
Seq Rel Date 2016/01/26
Spanned Gaps 3
Species Taxid 670
SSU Count 15
Submitter Giangxi Center for Disease Prevention and Control
Taxid 670
Total Gap Length 363
Translation Table 11
tRNA Count (total) 126
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LPZS00000000.1