Lactobacillus crispatus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
NCBI Strain Identifiers VMC5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002088015.1)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 260
N50 Contigs 24,683 bp
Longest Contig 90,015 bp
Scaffold Count 259
N50 Scaffolds 24,683 bp
Longest Scaffold 90,015 bp
Genome Size 2,242,963 bp
Protein Count 2,464
Coding Density 87.61%
GC Percentage 36.91%
Ambiguous Bases 3
GTDB representative GCA_002088015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM154151v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03893603
Country USA: Virginia
Date 2016-1-26
Genbank Assembly Accession GCA_001541515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vaginal
Latitude Longitude None
Molecule Count N/A
CDS Count 2,409
Refseq Category na
Seq Rel Date 2016/01/26
Spanned Gaps 1
Species Taxid 47770
SSU Count 3
Submitter Vaginal Microbiome Consortium
Taxid 47770
Total Gap Length 12
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJOK00000000.1