Agrobacterium tumefaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium tumefaciens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium tumefaciens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Agrobacterium; x__Agrobacterium tumefaciens complex; s__Agrobacterium tumefaciens; x__Agrobacterium tumefaciens str. B6
NCBI Strain Identifiers B6
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (208 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 52
N50 Contigs 254,976 bp
Longest Contig 717,115 bp
Scaffold Count 52
N50 Scaffolds 254,976 bp
Longest Scaffold 717,115 bp
Genome Size 5,657,766 bp
Protein Count 5,410
Coding Density 88.04%
GC Percentage 59.32%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154131v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04223554
Country USA: Shenandoah; Iowa
Date 2016-1-26
Genbank Assembly Accession GCA_001541315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Apple seedling crown gall
Latitude Longitude None
Molecule Count N/A
CDS Count 5,475
Refseq Category na
Seq Rel Date 2016/01/26
Spanned Gaps 0
Species Taxid 358
SSU Count 1
Submitter Monash University Malaysia
Taxid 1183423
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master LMVK00000000.1