Agrobacterium tumefaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium tumefaciens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium tumefaciens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Agrobacterium; x__Agrobacterium tumefaciens complex; s__Agrobacterium tumefaciens
NCBI Strain Identifiers NCPPB 3001
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species False (representative is GCA_001541315.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 22
N50 Contigs 480,726 bp
Longest Contig 1,435,066 bp
Scaffold Count 22
N50 Scaffolds 480,726 bp
Longest Scaffold 1,435,066 bp
Genome Size 5,497,300 bp
Protein Count 5,228
Coding Density 87.99%
GC Percentage 59.36%
Ambiguous Bases N/A
GTDB representative GCA_001541315.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154130v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04226578
Country None
Date 2016-1-26
Genbank Assembly Accession GCA_001541305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,318
Refseq Category na
Seq Rel Date 2016/01/26
Spanned Gaps 0
Species Taxid 358
SSU Count 1
Submitter Monash University Malaysia
Taxid 358
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master LMVJ00000000.1