Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei
NCBI Strain Identifiers Lc1542
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 2
23S Count 5
tRNA Count 20
Contig Count 86
N50 Contigs 98,070 bp
Longest Contig 264,917 bp
Scaffold Count 86
N50 Scaffolds 98,070 bp
Longest Scaffold 264,917 bp
Genome Size 2,924,051 bp
Protein Count 2,818
Coding Density 84.90%
GC Percentage 46.53%
Ambiguous Bases N/A
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM154088v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03702539
Country France
Date 2016-01-25
Genbank Assembly Accession GCA_001540885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source teat canal
Latitude Longitude None
Molecule Count N/A
CDS Count 3,012
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 1597
SSU Count 5
Submitter Geneva University Hospitals
Taxid 1597
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDEJ00000000.1