Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM233R
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 24
N50 Contigs 158,731 bp
Longest Contig 353,048 bp
Scaffold Count 24
N50 Scaffolds 158,731 bp
Longest Scaffold 353,048 bp
Genome Size 1,567,852 bp
Protein Count 1,491
Coding Density 91.43%
GC Percentage 38.88%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153830v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04087215
Country Malaysia
Date 2016-12-13
Genbank Assembly Accession GCA_001538305.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,495
Refseq Category na
Seq Rel Date 2016/12/13
Spanned Gaps 0
Species Taxid 210
SSU Count 3
Submitter University of Malaya-University of Western Australia
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJXQ00000000.2