Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. daphniphylli
NCBI Strain Identifiers CFBP 4219
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.27%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 355
N50 Contigs 41,937 bp
Longest Contig 139,202 bp
Scaffold Count 355
N50 Scaffolds 41,937 bp
Longest Scaffold 139,202 bp
Genome Size 6,256,075 bp
Protein Count 6,060
Coding Density 87.51%
GC Percentage 58.09%
Ambiguous Bases 2
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153825v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992192
Country Japan
Date 2016-1-25
Genbank Assembly Accession GCA_001538255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 6,137
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Edinburgh
Taxid 264455
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIIF00000000.1