Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. broussonetiae
NCBI Strain Identifiers CFBP 5140
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 5
tRNA Count 20
Contig Count 357
N50 Contigs 43,556 bp
Longest Contig 202,456 bp
Scaffold Count 357
N50 Scaffolds 43,556 bp
Longest Scaffold 202,456 bp
Genome Size 6,106,869 bp
Protein Count 5,944
Coding Density 86.64%
GC Percentage 57.80%
Ambiguous Bases 56
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153820v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992188
Country Japan
Date 2016-1-25
Genbank Assembly Accession GCA_001538205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 6,003
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Edinburgh
Taxid 129136
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIII00000000.1