Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas savastanoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas savastanoi; x__Pseudomonas savastanoi pv. fraxini
NCBI Strain Identifiers CFBP 5062
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 330
N50 Contigs 68,855 bp
Longest Contig 319,987 bp
Scaffold Count 330
N50 Scaffolds 68,855 bp
Longest Scaffold 319,987 bp
Genome Size 6,263,605 bp
Protein Count 6,080
Coding Density 87.25%
GC Percentage 57.95%
Ambiguous Bases N/A
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153815v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992201
Country Netherlands
Date 2016-1-25
Genbank Assembly Accession GCA_001538155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 6,177
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 29438
SSU Count 1
Submitter University of Edinburgh
Taxid 360922
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master LIIC00000000.1