Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. eriobotryae
NCBI Strain Identifiers CFBP 2343
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 128
N50 Contigs 133,333 bp
Longest Contig 302,059 bp
Scaffold Count 128
N50 Scaffolds 133,333 bp
Longest Scaffold 302,059 bp
Genome Size 6,321,563 bp
Protein Count 5,916
Coding Density 87.63%
GC Percentage 57.83%
Ambiguous Bases N/A
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153805v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992199
Country USA
Date 2016-1-25
Genbank Assembly Accession GCA_001538055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 6,020
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 47877
SSU Count 1
Submitter University of Edinburgh
Taxid 129137
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIID00000000.1