Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. aesculi
NCBI Strain Identifiers 2279
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 319
N50 Contigs 59,035 bp
Longest Contig 173,490 bp
Scaffold Count 319
N50 Scaffolds 59,035 bp
Longest Scaffold 173,490 bp
Genome Size 6,197,092 bp
Protein Count 5,878
Coding Density 87.59%
GC Percentage 58.27%
Ambiguous Bases N/A
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153804v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03989044
Country Netherlands
Date 2016-1-25
Genbank Assembly Accession GCA_001538045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source bleeding canker
Latitude Longitude None
Molecule Count N/A
CDS Count 5,984
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 47877
SSU Count 1
Submitter University of Edinburgh
Taxid 251722
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LILH00000000.1