Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae
NCBI Strain Identifiers HRI-W 7872
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 105
N50 Contigs 212,122 bp
Longest Contig 829,791 bp
Scaffold Count 105
N50 Scaffolds 212,122 bp
Longest Scaffold 829,791 bp
Genome Size 5,899,795 bp
Protein Count 5,107
Coding Density 88.06%
GC Percentage 59.35%
Ambiguous Bases N/A
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153587v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992220
Country United Kingdom
Date 2016-1-25
Genbank Assembly Accession GCA_001535875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 5,324
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Edinburgh
Taxid 321
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIHS00000000.1