Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. morsprunorum
NCBI Strain Identifiers HRI-W 5261
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 20.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 263
N50 Contigs 83,133 bp
Longest Contig 258,299 bp
Scaffold Count 263
N50 Scaffolds 83,133 bp
Longest Scaffold 258,299 bp
Genome Size 6,470,123 bp
Protein Count 6,089
Coding Density 87.10%
GC Percentage 58.44%
Ambiguous Bases N/A
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153575v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992207
Country United Kingdom
Date 2016-1-25
Genbank Assembly Accession GCA_001535755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 6,338
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 47877
SSU Count 1
Submitter University of Edinburgh
Taxid 129138
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIIA00000000.1