Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae
NCBI Strain Identifiers 2340
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 96
N50 Contigs 246,416 bp
Longest Contig 512,114 bp
Scaffold Count 96
N50 Scaffolds 246,416 bp
Longest Scaffold 512,114 bp
Genome Size 6,181,159 bp
Protein Count 5,378
Coding Density 87.91%
GC Percentage 59.13%
Ambiguous Bases N/A
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153572v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03992219
Country Hungary
Date 2016-1-25
Genbank Assembly Accession GCA_001535725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Plant material
Latitude Longitude None
Molecule Count N/A
CDS Count 5,612
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Edinburgh
Taxid 321
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIHT00000000.1