Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Tennessee
NCBI Strain Identifiers CFSAN001378
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.24%
CheckM Contamination 1.43%
CheckM Strain Heterogeneity 35.29
5S Count 4
16S Count 1
23S Count 4
tRNA Count 19
Contig Count 532
N50 Contigs 22,474 bp
Longest Contig 90,238 bp
Scaffold Count 532
N50 Scaffolds 22,474 bp
Longest Scaffold 90,238 bp
Genome Size 4,769,243 bp
Protein Count 4,859
Coding Density 87.41%
GC Percentage 52.15%
Ambiguous Bases 1
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153519v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261209
Country USA: KY
Date 2016-1-25
Genbank Assembly Accession GCA_001535195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source peanut butter from sick patient
Latitude Longitude None
Molecule Count N/A
CDS Count 5,013
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter Arizona State Public Health Laboratory
Taxid 143221
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRNX00000000.1