Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Tennessee
NCBI Strain Identifiers CFSAN001354
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.86%
CheckM Strain Heterogeneity 9.09
5S Count 6
16S Count 1
23S Count 5
tRNA Count 19
Contig Count 247
N50 Contigs 47,954 bp
Longest Contig 290,185 bp
Scaffold Count 247
N50 Scaffolds 47,954 bp
Longest Scaffold 290,185 bp
Genome Size 4,780,684 bp
Protein Count 4,642
Coding Density 87.48%
GC Percentage 52.20%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM153509v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261194
Country USA: IA
Date 2016-1-25
Genbank Assembly Accession GCA_001535095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 4,866
Refseq Category na
Seq Rel Date 2016/01/25
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter New York State Dept. of Health - Wadsworth Center
Taxid 143221
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LROC00000000.1