Sporosarcina koreensis_C
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Sporosarcina; s__Sporosarcina koreensis_C
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Sporosarcina; s__Sporosarcina koreensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Sporosarcina; s__Sporosarcina koreensis
NCBI Strain Identifiers Q1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.9%
CheckM Contamination 2.87%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 8
23S Count 18
tRNA Count 19
Contig Count 538
N50 Contigs 30,982 bp
Longest Contig 158,575 bp
Scaffold Count 425
N50 Scaffolds 71,996 bp
Longest Scaffold 212,283 bp
Genome Size 4,340,200 bp
Protein Count 4,649
Coding Density 86.44%
GC Percentage 44.44%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM153144v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04383605
Country Qatar
Date 2016-1-22
Genbank Assembly Accession GCA_001531445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sand from a barchan sand dune
Latitude Longitude 25.00945 N 51.340490000000045 E
Molecule Count N/A
CDS Count 4,477
Refseq Category representative genome
Seq Rel Date 2016/01/22
Spanned Gaps 113
Species Taxid 334735
SSU Count 14
Submitter Cornell University
Taxid 334735
Total Gap Length 4828
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQYA00000000.1