Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Thiobacillaceae; g__Thiobacillus; s__Thiobacillus denitrificans_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Nitrosomonadales; f__Thiobacillaceae; g__Thiobacillus; s__Thiobacillus denitrificans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Nitrosomonadales; f__Thiobacillaceae; g__Thiobacillus; s__Thiobacillus denitrificans
NCBI Strain Identifiers RG
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.74%
CheckM Contamination 3.83%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 19
Contig Count 120
N50 Contigs 77,751 bp
Longest Contig 219,159 bp
Scaffold Count 86
N50 Scaffolds 146,048 bp
Longest Scaffold 312,422 bp
Genome Size 3,293,652 bp
Protein Count 3,320
Coding Density 89.61%
GC Percentage 62.81%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM153012v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03731048
Country Canada: Alberta
Date 2016-1-22
Genbank Assembly Accession GCA_001530125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subglacial sediments
Latitude Longitude None
Molecule Count N/A
CDS Count 3,291
Refseq Category representative genome
Seq Rel Date 2016/01/22
Spanned Gaps 34
Species Taxid 36861
SSU Count 2
Submitter University of Cincinnati
Taxid 36861
Total Gap Length 5137
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDUG00000000.1