Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis; x__Bordetella pertussis 18323
NCBI Strain Identifiers FDAARGOS_178
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (891 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 1.4%
CheckM Strain Heterogeneity 80.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 4
N50 Contigs 3,304,537 bp
Longest Contig 3,304,537 bp
Scaffold Count 4
N50 Scaffolds 3,304,537 bp
Longest Scaffold 3,304,537 bp
Genome Size 4,136,096 bp
Protein Count 4,075
Coding Density 89.41%
GC Percentage 67.67%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152555v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996251
Country None
Date 2018-01-19
Genbank Assembly Accession GCA_001525555.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,938
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 520
SSU Count 4
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 568706
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LRIH00000000.2