Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers FDAARGOS_102
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 10
23S Count 10
tRNA Count 20
Contig Count 3
N50 Contigs 2,956,074 bp
Longest Contig 2,956,074 bp
Scaffold Count 3
N50 Scaffolds 2,956,074 bp
Longest Scaffold 2,956,074 bp
Genome Size 4,071,484 bp
Protein Count 3,599
Coding Density 86.30%
GC Percentage 47.47%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152552v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996252
Country India: Calcutta
Date 2018-01-19
Genbank Assembly Accession GCA_001525525.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,804
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 666
SSU Count 10
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 666
Total Gap Length 0
Translation Table 11
tRNA Count (total) 102
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LRIK00000000.2