Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN05779
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.07%
CheckM Strain Heterogeneity 45.45
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 244
N50 Contigs 74,054 bp
Longest Contig 201,523 bp
Scaffold Count 244
N50 Scaffolds 74,054 bp
Longest Scaffold 201,523 bp
Genome Size 5,137,299 bp
Protein Count 5,047
Coding Density 87.94%
GC Percentage 50.66%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152165v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04388578
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001521655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,510
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQWS00000000.1