Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02350
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 204
N50 Contigs 58,676 bp
Longest Contig 172,510 bp
Scaffold Count 204
N50 Scaffolds 58,676 bp
Longest Scaffold 172,510 bp
Genome Size 5,250,907 bp
Protein Count 5,023
Coding Density 87.81%
GC Percentage 50.40%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152122v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922957
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001521225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,458
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQTE00000000.1