Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02820
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 55.56
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 306
N50 Contigs 36,236 bp
Longest Contig 122,344 bp
Scaffold Count 306
N50 Scaffolds 36,236 bp
Longest Scaffold 122,344 bp
Genome Size 5,137,000 bp
Protein Count 5,100
Coding Density 87.67%
GC Percentage 50.57%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152084v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04388543
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001520845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,564
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQVK00000000.1