Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN03409
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 7.55%
CheckM Strain Heterogeneity 95.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 9
N50 Contigs 5,127,203 bp
Longest Contig 5,127,203 bp
Scaffold Count 9
N50 Scaffolds 5,127,203 bp
Longest Scaffold 5,127,203 bp
Genome Size 5,631,669 bp
Protein Count 5,458
Coding Density 87.41%
GC Percentage 50.66%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152077v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04388554
Country USA
Date 2018-12-9
Genbank Assembly Accession GCA_001520775.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,612
Refseq Category na
Seq Rel Date 2018/12/09
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 98
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQVV00000000.2