Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02441
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 1.7%
CheckM Strain Heterogeneity 73.68
5S Count 1
16S Count 6
23S Count 1
tRNA Count 19
Contig Count 236
N50 Contigs 36,127 bp
Longest Contig 170,018 bp
Scaffold Count 236
N50 Scaffolds 36,127 bp
Longest Scaffold 170,018 bp
Genome Size 5,172,703 bp
Protein Count 5,104
Coding Density 88.08%
GC Percentage 50.71%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152040v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922977
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001520405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,544
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQTV00000000.1