Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02404
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.67%
CheckM Strain Heterogeneity 76.47
5S Count 1
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 240
N50 Contigs 34,262 bp
Longest Contig 101,463 bp
Scaffold Count 240
N50 Scaffolds 34,262 bp
Longest Scaffold 101,463 bp
Genome Size 5,023,993 bp
Protein Count 4,882
Coding Density 88.41%
GC Percentage 50.42%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152031v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922969
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001520315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,260
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQTO00000000.1