Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02514
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.58%
CheckM Contamination 1.4%
CheckM Strain Heterogeneity 35.71
5S Count 1
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 417
N50 Contigs 24,018 bp
Longest Contig 93,723 bp
Scaffold Count 417
N50 Scaffolds 24,018 bp
Longest Scaffold 93,723 bp
Genome Size 5,213,394 bp
Protein Count 5,190
Coding Density 88.04%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM152023v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922990
Country USA
Date 2016-01-20
Genbank Assembly Accession GCA_001520235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,705
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQUF00000000.1